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| Session | Date/Time | Location | Title | Type | Authors | Keywords |
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Monday, July 29th |
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| PHYL1001 | July 29th 8:00 am | San Ignacio/Starr Pass | Deep phylogenetic incongruence in Neotropical rain forest trees (Oxandra, Annonaceae)
Log in to add this item to your schedule | Oral Paper | Chatrou, Lars. | Genome skimming
chloroplast genome
Mitochondrial genome
nuclear ribosomal DNA
Annonaceae
Deep incongruence |
| PHYL1002 | July 29th 8:15 am | San Ignacio/Starr Pass | Phylogenomic analysis of Cycas section Indosinenses using RADseq
Log in to add this item to your schedule | Oral Paper | Liu, Jian; Nagalingum, Nathalie; Lujan, Manuel A; Lindstrom, Anders J.. | Cycas
Indochina
RADseq
phylogenomics |
| PHYL1003 | July 29th 8:30 am | San Ignacio/Starr Pass | A phylogenetic analysis of the eucalypts using targeted genes
Log in to add this item to your schedule | Oral Paper | Crisp, Michael; Kulheim, Carsten; Toon, Alicia; Edwards, Robert; Lin, Yen-Po; Meuesemann, Karen; Bui, Minh; Cook, Lyn. | illumina
genome
paralogy
Myrtaceae
Eucalyptus
classification
perianth evolution |
| PHYL1004 | July 29th 8:45 am | San Ignacio/Starr Pass | Target sequence capture in orchids: Developing a kit to sequence hundreds of single copy loci across all orchids
Log in to add this item to your schedule | Oral Paper | Eserman, Lauren; Thomas, Shawn; Coffey, Emily; Leebens-Mack, Jim. | phylogenomics
target enrichment
Next Generation Sequencing |
| PHYL1005 | July 29th 9:00 am | San Ignacio/Starr Pass | A phylogenomic approach to decode contentious relationships across all angiosperm families
Log in to add this item to your schedule | Oral Paper | Pokorny, Lisa; Steven, Dodsworth; Johnson, Matthew; Maurin, Olivier; Epitawalage, Niroshini; Bellot, Sidonie; Botigué, Laura R.; Brewer, Grace; Chase, Mark; Cowan, Robyn; Eiserhardt, Wolf; de la Estrella, Manuel; Hidalgo, Oriane; Kersey, Paul; Kim, Jan; Larridon, Isabel; Murphy, Bruce; Pellicer, Jaume; de Vos, Jurriaan; Wickett, Norman; Leitch, Ilia; Forest, Felix; Baker, William. | Angiosperms
phylogenomics
Hyb-Seq
target enrichment
Sequence Capture
Systematic Botany
Phylogenetic Conflict |
| PHYL1006 | July 29th 9:15 am | San Ignacio/Starr Pass | The Plant and Fungal Trees of Life (PAFTOL) project: a case study from the carrot family (Apiaceae)
Log in to add this item to your schedule | Oral Paper | Clarkson, James; Maurin, Olivier; Brewer, Grace; Epitawalage, Niroshini; Zuntini, Alexandre; Kim, Jan; Bailey, Paul; Smith, James; Plunkett, Gregory; Downie, Stephen; Forest, Felix; Baker, William. | Tree of Life
PAFTOL
Angiosperms 353
Sequence Capture
Apiaceae |
| PHYL1007 | July 29th 9:30 am | San Ignacio/Starr Pass | Disentangling the evolutionary relationships of Aizoaceae using transcriptome data
Log in to add this item to your schedule | Oral Paper | Zhao, Lijun; Walker, Joseph; Yang, Ya; Wang, Ning; Marx, Hannah; Brockington, Samuel; Moore, Michael; Smith, Stephen. | phylogenomics
Transcriptome
Aizoaceae |
| July 29th 9:45 am | San Ignacio/Starr Pass | Break
Log in to add this item to your schedule | | | |
| PHYL1009 | July 29th 10:15 am | San Ignacio/Starr Pass | Lewis’s lost Lomatium found: Investigating species boundaries in the rare plant species subcomplex, Lomatium packardiae/anomalum
Log in to add this item to your schedule | Oral Paper | Ottenlips, Michael; Buerki, Sven; Mansfield, Don; Dodsworth, Steven; Forest, Felix; Smith, James. | incomplete lineage sorting
Angiosperm 353
target-enrichment |
| PHYL1010 | July 29th 10:30 am | San Ignacio/Starr Pass | Plastid Genome-based Phylogeny of Cornales – Insights Into Biogeographic History and Diversification
Log in to add this item to your schedule | Oral Paper | Xiang, Jenny; Fu, Chaonan; Gao, Lianming. | The complete cp genome phylogenyÂ
Cornales
biogeography
Micaroevolution |
| PHYL1011 | July 29th 10:45 am | San Ignacio/Starr Pass | Using a phylogenomic approach to resolve the systematics and taxonomy of Tibouchina s.s.
Log in to add this item to your schedule | Oral Paper | Jantzen, Johanna; Oliveira, Ana Luiza Freitas; Soltis, Douglas; Soltis, Pamela. | phylogenomics
target enrichment
Melastomataceae
Tibouchina
Cerrado
Campos rupestres |
| PHYL1012 | July 29th 11:00 am | San Ignacio/Starr Pass | The power of population sampling, splash-zone introns, and summary coalescent methods in targeted enrichment: untangling species relationships in Oenothera sect. Calylophus
Log in to add this item to your schedule | Oral Paper | Cooper, Benjamin; Moore, Michael; Wickett, Norman; Wagner, Warren; Johnson, Matthew; Overson, Rick; Skogen, Krissa. | target enrichment
HybPiper
multispecies coalescent
Onagraceae
Oenothera
Calylophus
Pollinator Shifts
gypsum |
| PHYL1013 | July 29th 11:15 am | San Ignacio/Starr Pass | Revisiting the origin of the octoploid strawberry
Log in to add this item to your schedule | Oral Paper | Liston, A.; Wei, Na; Tennessen, Jacob; Li, Junmin; Dong, Ming; Ashman, Tia-Lynn. | Fragaria
polyploidy
Whole Genome Sequencing |
| PHYL1014 | July 29th 11:30 am | San Ignacio/Starr Pass | Plastome structure and phylogenomics of a Brazilian mycoheterotrophic orchid, Pogoniopsis schenckii (Orchidaceae)
Log in to add this item to your schedule | Oral Paper | Klimpert, Nathaniel; Mayer, Juliana; Pinheiro, Fabio; Proscdocimi, Francisco; Sarzi, Diese; Furtado, Carolina; Graham, Sean. | Mycoheterotrophy
gene loss
Genome Evolution
plastid
Orchidaceae |
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| PPL001 | July 29th 5:30 pm | Arizona Ballroom/Starr Pass | Systematics of Sanvitalia and Future Phylogenetics of Subtribe Zinniinae
Log in to add this item to your schedule | Poster: Phylogenomics | Skibicki, Sam. | Phylogenetics
Sanvitalia
Zinniinae
Heliantheae
Asteraceae
biogeography |
| PPL002 | July 29th 5:30 pm | Arizona Ballroom/Starr Pass | Biogeography of the whorled wattles (Acacia section Lycopodiifoliae) in the Australian Monsoon Tropics
Log in to add this item to your schedule | Poster: Phylogenomics | Conejo, Nancy; Martine, Christopher; Jobson, Peter; Cantley, Jason; Cantley, Jason; J. McDonnell, Angela. | biogeography
Barriers
phylogeny
Australian Monsoon Tropics
population genetics |
| PPL003 | July 29th 5:30 pm | Arizona Ballroom/Starr Pass | Genomic phylogeography and species delimitation in Phycella s.l. (Amaryllidaceae tribe Hippeastreae)
Log in to add this item to your schedule | Poster: Phylogenomics | Garcia, Nicolas; Folk, Ryan. | speciation
target enrichment
monocots
Chile |
| PPL004 | July 29th 5:30 pm | Arizona Ballroom/Starr Pass | Initial analyses of Magnolia genome data
Log in to add this item to your schedule | Poster: Phylogenomics | Weinheimer, Ellen; Pease, James; Whitener, Makenzie. | phylogenomics
genome
magnolia |
| PPL005 | July 29th 5:30 pm | Arizona Ballroom/Starr Pass | The Evolutionary Relationships in Pertyeae (Asteraceae) inferred from Hyb-Seq Data
Log in to add this item to your schedule | Poster: Phylogenomics | Gomez, Jorge; Siniscalchi, Carolina; Mandel, Jennifer. | Compositae
systematics
phylogenomics |
| PPL006 | July 29th 5:30 pm | Arizona Ballroom/Starr Pass | Evolutionary Relationships in the Euglossine Bee Pollinated Orchid Genus, Stanhopea
Log in to add this item to your schedule | Poster: Phylogenomics | Jordan, Chazz; Brinkman, Becky; Coffey (PhD), Emily; Eserman (PhD), Lauren. | 0rchid |
| PPL007 | July 29th 5:30 pm | Arizona Ballroom/Starr Pass | Phylogenetic patterns of ecological niche evolution in Diapensiaceae
Log in to add this item to your schedule | Poster: Phylogenomics | Gaynor, Michelle; Soltis, Douglas; Soltis, Pamela. | phylogenomics
biogeography
ecological niche modelling
Diapensiaceae |
| PPL008 | July 29th 5:30 pm | Arizona Ballroom/Starr Pass | Developing a new bioinformatics pipeline to capture low-copy nuclear loci for two distant clades of Melastomataceae
Log in to add this item to your schedule | Poster: Phylogenomics | Amarasinghe, Prabha; Jantzen, Johanna; Folk, Ryan; Soltis, Douglas; Soltis, Pamela; Cellinese, Nico. | Memecylon
Tibouchina
Melastomataceae
phylogenomics
target enrichment
MarkerMiner
HybPiper |
| PPL009 | July 29th 5:30 pm | Arizona Ballroom/Starr Pass | Genome sequencing based phylogenetic analyses of Streptanthus, Caulanthus, and related genera (Brassicacae)
Log in to add this item to your schedule | Poster: Phylogenomics | Daundasekara, Kasuni; Garza, Elyssa; Pepper, Alan. | Brassicaceae
serpentine
low-coverage genome sequencing
phylogeny |
| PPL010 | July 29th 5:30 pm | Arizona Ballroom/Starr Pass | Phylogenomics of Adesmia (Fabaceae) and the discordance between nuclear and plastome phylogenies
Log in to add this item to your schedule | Poster: Phylogenomics | Ortiz, Edgardo M.; Vargas, Oscar M; Goncalves, Deise; Simpson, Beryl. | low copy nuclear genes
plastome
nuclear ribosomal DNA
de novo
Genome skimming
discordance
Fabaceae
Dalbergieae
Adesmia |
| PPL011 | July 29th 5:30 pm | Arizona Ballroom/Starr Pass | Phylogeny and Biogeography of the Cladrastis clade (Leguminosae: Papilonoideae)
Log in to add this item to your schedule | Poster: Phylogenomics | Duan, Lei; Wen, Jun; Harris, Aj; Chen, Hong-Feng. | biome shift
Cladrastideae
Cladrastis
Leguminosae
Styphnolobium
the Cladrastis clade |
Wednesday, July 31st |
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| PHYL2001 | July 31st 1:30 pm | Tucson F/Starr Pass | Canceled Phylogeny and Biogeography of the Cladrastis clade (Leguminosae: Papilonoideae)
Log in to add this item to your schedule | Oral Paper | Duan, Lei; Wen, Jun; Harris, Aj; Chen, Hong-Feng. | biome shift
Cladrastideae
Cladrastis
Leguminosae
Styphnolobium
the Cladrastis clade |
| PHYL2002 | July 31st 1:45 pm | Tucson F/Starr Pass | Species level phylogeny for the order Cornales based on molecular data from nuclear gene target enrichment
Log in to add this item to your schedule | Oral Paper | Thomas, Shawn; Liu, Xiang; Cummings, Amanda; Xiang, Jenny; Leebens-Mack, Jim. | phylogenomics
target-enrichment
Sequence Capture
Next Generation Sequencing |
| PHYL2003 | July 31st 2:00 pm | Tucson F/Starr Pass | Phylogenomic discordance in the New World grapes suggests widespread introgressions as a driver for species diversifications
Log in to add this item to your schedule | Oral Paper | Nie, Zelong; Ma, Zhiyao; Johnson, Gabriel; Ren, Chen; Ickert-Bond, Stefanie; Zimmer, Elizabeth; Wen, Jun. | phylogenomics
grapes
Vitis
Vitaceae
introgressionj
discordance |
| PHYL2004 | July 31st 2:15 pm | Tucson F/Starr Pass | A fully resolved backbone phylogeny reveals numerous dispersals and explosive diversifications throughout the history of Asteraceae
Log in to add this item to your schedule | Oral Paper | Mandel, Jennifer; Dikow, Rebecca; Siniscalchi, Carolina; Thapa, Ramhari; Watson, Linda; Funk, Vicki. | Compositae
systematics
Sunflower |
| PHYL2005 | July 31st 2:30 pm | Tucson F/Starr Pass | Combining Genome Skims and Transcriptomes for a Phylogenomic framework of Acanthaceae
Log in to add this item to your schedule | Oral Paper | Arias, Joshua; McDade, Lucinda; Kiel, Carrie; Tripp, Erin; Fisher, Amanda. | Lamiales
phylogenomics |
| PHYL2006 | July 31st 2:45 pm | Tucson F/Starr Pass | Phylogenomics of Castenea, Hamamelis, and Torreya inferred from RAD-Seq data – Insights into origin and evolution of eastern Asia-North American disjunct biogeography pattern
Log in to add this item to your schedule | Oral Paper | Zhou, Wenbin; Xiang, Jenny. | phylogenomics
EA-NAM disjunction
morphostasis
biogeographic history
morphological evolution
niche evolution |
| PHYL2007 | July 31st 3:00 pm | Tucson F/Starr Pass | Phylogenomics of the Neotropical spiral gingers (Costaceae)
Log in to add this item to your schedule | Oral Paper | Valderrama, Eugenio; Sass, Chodon; Guan, Clarice; André, Thiago; Maas, Paul J. M.; Maas-van de Kamer, Hiltje; Skinner, David L.; Specht, Chelsea. | Costaceae
Costus
Chamaecostus
Neotropical
phylogenomics
taxonomy |
| July 31st 3:15 pm | Tucson F/Starr Pass | Break
Log in to add this item to your schedule | | | |
| PHYL2009 | July 31st 3:45 pm | Tucson F/Starr Pass | Developing Phylyogenetic Hypotheses for Leucaena through Reference Guided and de novo Transcriptomics
Log in to add this item to your schedule | Oral Paper | Abair, Alexander; Dugas, Diana; Madhugiri, Nageswara-Rao; Hughes, Colin; Bailey, C. Donovan. | Leucaena
Leguminosae
Polyploid
phylogeny
genomics
Transcriptomics
hybridization
orthology
paralogy |
| PHYL2010 | July 31st 4:00 pm | Tucson F/Starr Pass | An integrated pipeline for ortholog discovery, bait design, and targeted capture data assembly and the development of a bait set for the Cucurbitaceae
Log in to add this item to your schedule | Oral Paper | Ortiz, Edgardo M.; Vargas, Oscar M; Schaefer, Hanno. | Cucumis
Cucurbitaceae
targeted capture
target enrichment
nuclear genes
orthologs
plastome
marker selection
bait design
bioinformatics
pipeline |
| PHYL2011 | July 31st 4:15 pm | Tucson F/Starr Pass | Iris of the Mediterranean: using phylogenomics to investigate putative color forms, phenological variants, and hybrids in subgenus Xiphium
Log in to add this item to your schedule | Oral Paper | Wilson, Carol; Boosalis, Zoe A.; Sandor, Michael; Crespo, Manuel B; Azorin, Mario M. | Genome skimming
Iridaceae
targeted capture |
| PHYL2012 | July 31st 4:30 pm | Tucson F/Starr Pass | Towards a reclassification of Dioscoreales using organellar phylogenomics and morphology
Log in to add this item to your schedule | Oral Paper | Soto Gomez, Marybel; Lin, Qianshi; Lam, Vivienne; Merckx, Vincent; Rudall, Paula J; Graham, Sean. | Afrothismia
APG update
molecular and morphological data
non-photosynthetic monocots
plastid and mitochondrial phylogenomics |
| PHYL2013 | July 31st 4:45 pm | Tucson F/Starr Pass | Chloroplast phylogenomics in the New World clade of Astragalus L. (Fabaceae)
Log in to add this item to your schedule | Oral Paper | Charboneau, Joseph; Cronn, Richard; Liston, A.; Wojciechowski, Martin; Sanderson, Michael. | chloroplast genome |
