ID | Title | Section/Topic | Authors | Keywords |
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850 | A fully resolved backbone phylogeny reveals numerous dispersals and explosive diversifications throughout the history of Asteraceae Log in to add this item to your schedule | Phylogenomics | Mandel, Jennifer; Dikow, Rebecca; Siniscalchi, Carolina; Thapa, Ramhari; Watson, Linda; Funk, Vicki. | Compositae systematics Sunflower |
943 | An integrated pipeline for ortholog discovery, bait design, and targeted capture data assembly and the development of a bait set for the Cucurbitaceae Log in to add this item to your schedule | Phylogenomics | Ortiz, Edgardo M.; Vargas, Oscar M; Schaefer, Hanno. | Cucumis Cucurbitaceae targeted capture target enrichment nuclear genes orthologs plastome marker selection bait design bioinformatics pipeline |
282 | A phylogenetic analysis of the eucalypts using targeted genes Log in to add this item to your schedule | Phylogenomics | Crisp, Michael; Kulheim, Carsten; Toon, Alicia; Edwards, Robert; Lin, Yen-Po; Meuesemann, Karen; Bui, Minh; Cook, Lyn. | illumina genome paralogy Myrtaceae Eucalyptus classification perianth evolution |
393 | A phylogenomic approach to decode contentious relationships across all angiosperm families Log in to add this item to your schedule | Phylogenomics | Pokorny, Lisa; Steven, Dodsworth; Johnson, Matthew; Maurin, Olivier; Epitawalage, Niroshini; Bellot, Sidonie; Botigué, Laura R.; Brewer, Grace; Chase, Mark; Cowan, Robyn; Eiserhardt, Wolf; de la Estrella, Manuel; Hidalgo, Oriane; Kersey, Paul; Kim, Jan; Larridon, Isabel; Murphy, Bruce; Pellicer, Jaume; de Vos, Jurriaan; Wickett, Norman; Leitch, Ilia; Forest, Felix; Baker, William. | Angiosperms phylogenomics Hyb-Seq target enrichment Sequence Capture Systematic Botany Phylogenetic Conflict |
188 | Biogeography of the whorled wattles (Acacia section Lycopodiifoliae) in the Australian Monsoon Tropics Log in to add this item to your schedule | Phylogenomics | Conejo, Nancy; Martine, Christopher; Jobson, Peter; Cantley, Jason; Cantley, Jason; J. McDonnell, Angela. | biogeography Barriers phylogeny Australian Monsoon Tropics population genetics |
1055 | Chloroplast phylogenomics in the New World clade of Astragalus L. (Fabaceae) Log in to add this item to your schedule | Phylogenomics | Charboneau, Joseph; Cronn, Richard; Liston, A.; Wojciechowski, Martin; Sanderson, Michael. | chloroplast genome |
887 | Combining Genome Skims and Transcriptomes for a Phylogenomic framework of Acanthaceae Log in to add this item to your schedule | Phylogenomics | Arias, Joshua; McDade, Lucinda; Kiel, Carrie; Tripp, Erin; Fisher, Amanda. | Lamiales phylogenomics |
225 | Deep phylogenetic incongruence in Neotropical rain forest trees (Oxandra, Annonaceae) Log in to add this item to your schedule | Phylogenomics | Chatrou, Lars. | Genome skimming chloroplast genome Mitochondrial genome nuclear ribosomal DNA Annonaceae Deep incongruence |
595 | Developing a new bioinformatics pipeline to capture low-copy nuclear loci for two distant clades of Melastomataceae Log in to add this item to your schedule | Phylogenomics | Amarasinghe, Prabha; Jantzen, Johanna; Folk, Ryan; Soltis, Douglas; Soltis, Pamela; Cellinese, Nico. | Memecylon Tibouchina Melastomataceae phylogenomics target enrichment MarkerMiner HybPiper |
923 | Developing Phylyogenetic Hypotheses for Leucaena through Reference Guided and de novo Transcriptomics Log in to add this item to your schedule | Phylogenomics | Abair, Alexander; Dugas, Diana; Madhugiri, Nageswara-Rao; Hughes, Colin; Bailey, C. Donovan. | Leucaena Leguminosae Polyploid phylogeny genomics Transcriptomics hybridization orthology paralogy |
510 | Disentangling the evolutionary relationships of Aizoaceae using transcriptome data Log in to add this item to your schedule | Phylogenomics | Zhao, Lijun; Walker, Joseph; Yang, Ya; Wang, Ning; Marx, Hannah; Brockington, Samuel; Moore, Michael; Smith, Stephen. | phylogenomics Transcriptome Aizoaceae |
546 | Evolutionary Relationships in the Euglossine Bee Pollinated Orchid Genus, Stanhopea Log in to add this item to your schedule | Phylogenomics | Jordan, Chazz; Brinkman, Becky; Coffey (PhD), Emily; Eserman (PhD), Lauren. | 0rchid |
753 | Genome sequencing based phylogenetic analyses of Streptanthus, Caulanthus, and related genera (Brassicacae) Log in to add this item to your schedule | Phylogenomics | Daundasekara, Kasuni; Garza, Elyssa; Pepper, Alan. | Brassicaceae serpentine low-coverage genome sequencing phylogeny |
356 | Genomic phylogeography and species delimitation in Phycella s.l. (Amaryllidaceae tribe Hippeastreae) Log in to add this item to your schedule | Phylogenomics | Garcia, Nicolas; Folk, Ryan. | speciation target enrichment monocots Chile |
398 | Initial analyses of Magnolia genome data Log in to add this item to your schedule | Phylogenomics | Weinheimer, Ellen; Pease, James; Whitener, Makenzie. | phylogenomics genome magnolia |
976 | Iris of the Mediterranean: using phylogenomics to investigate putative color forms, phenological variants, and hybrids in subgenus Xiphium Log in to add this item to your schedule | Phylogenomics | Wilson, Carol; Boosalis, Zoe A.; Sandor, Michael; Crespo, Manuel B; Azorin, Mario M. | Genome skimming Iridaceae targeted capture |
512 | Lewis’s lost Lomatium found: Investigating species boundaries in the rare plant species subcomplex, Lomatium packardiae/anomalum Log in to add this item to your schedule | Phylogenomics | Ottenlips, Michael; Buerki, Sven; Mansfield, Don; Dodsworth, Steven; Forest, Felix; Smith, James. | incomplete lineage sorting Angiosperm 353 target-enrichment |
571 | Phylogenetic patterns of ecological niche evolution in Diapensiaceae Log in to add this item to your schedule | Phylogenomics | Gaynor, Michelle; Soltis, Douglas; Soltis, Pamela. | phylogenomics biogeography ecological niche modelling Diapensiaceae |
246 | Phylogenomic analysis of Cycas section Indosinenses using RADseq Log in to add this item to your schedule | Phylogenomics | Liu, Jian; Nagalingum, Nathalie; Lujan, Manuel A; Lindstrom, Anders J.. | Cycas Indochina RADseq phylogenomics |
840 | Phylogenomic discordance in the New World grapes suggests widespread introgressions as a driver for species diversifications Log in to add this item to your schedule | Phylogenomics | Nie, Zelong; Ma, Zhiyao; Johnson, Gabriel; Ren, Chen; Ickert-Bond, Stefanie; Zimmer, Elizabeth; Wen, Jun. | phylogenomics grapes Vitis Vitaceae introgressionj discordance |
932 | Phylogenomics of Adesmia (Fabaceae) and the discordance between nuclear and plastome phylogenies Log in to add this item to your schedule | Phylogenomics | Ortiz, Edgardo M.; Vargas, Oscar M; Goncalves, Deise; Simpson, Beryl. | low copy nuclear genes plastome nuclear ribosomal DNA de novo Genome skimming discordance Fabaceae Dalbergieae Adesmia |
889 | Phylogenomics of Castenea, Hamamelis, and Torreya inferred from RAD-Seq data – Insights into origin and evolution of eastern Asia-North American disjunct biogeography pattern Log in to add this item to your schedule | Phylogenomics | Zhou, Wenbin; Xiang, Jenny. | phylogenomics EA-NAM disjunction morphostasis biogeographic history morphological evolution niche evolution |
900 | Phylogenomics of the Neotropical spiral gingers (Costaceae) Log in to add this item to your schedule | Phylogenomics | Valderrama, Eugenio; Sass, Chodon; Guan, Clarice; André, Thiago; Maas, Paul J. M.; Maas-van de Kamer, Hiltje; Skinner, David L.; Specht, Chelsea. | Costaceae Costus Chamaecostus Neotropical phylogenomics taxonomy |
786 | Canceled Phylogeny and Biogeography of the Cladrastis clade (Leguminosae: Papilonoideae) Log in to add this item to your schedule | Phylogenomics | Duan, Lei; Wen, Jun; Harris, Aj; Chen, Hong-Feng. | biome shift Cladrastideae Cladrastis Leguminosae Styphnolobium the Cladrastis clade |
1425 | Phylogeny and Biogeography of the Cladrastis clade (Leguminosae: Papilonoideae) Log in to add this item to your schedule | Phylogenomics | Duan, Lei; Wen, Jun; Harris, Aj; Chen, Hong-Feng. | biome shift Cladrastideae Cladrastis Leguminosae Styphnolobium the Cladrastis clade |
523 | Plastid Genome-based Phylogeny of Cornales – Insights Into Biogeographic History and Diversification Log in to add this item to your schedule | Phylogenomics | Xiang, Jenny; Fu, Chaonan; Gao, Lianming. | The complete cp genome phylogeny Cornales biogeography Micaroevolution |
783 | Plastome structure and phylogenomics of a Brazilian mycoheterotrophic orchid, Pogoniopsis schenckii (Orchidaceae) Log in to add this item to your schedule | Phylogenomics | Klimpert, Nathaniel; Mayer, Juliana; Pinheiro, Fabio; Proscdocimi, Francisco; Sarzi, Diese; Furtado, Carolina; Graham, Sean. | Mycoheterotrophy gene loss Genome Evolution plastid Orchidaceae |
720 | Revisiting the origin of the octoploid strawberry Log in to add this item to your schedule | Phylogenomics | Liston, A.; Wei, Na; Tennessen, Jacob; Li, Junmin; Dong, Ming; Ashman, Tia-Lynn. | Fragaria polyploidy Whole Genome Sequencing |
796 | Species level phylogeny for the order Cornales based on molecular data from nuclear gene target enrichment Log in to add this item to your schedule | Phylogenomics | Thomas, Shawn; Liu, Xiang; Cummings, Amanda; Xiang, Jenny; Leebens-Mack, Jim. | phylogenomics target-enrichment Sequence Capture Next Generation Sequencing |
124 | Systematics of Sanvitalia and Future Phylogenetics of Subtribe Zinniinae Log in to add this item to your schedule | Phylogenomics | Skibicki, Sam. | Phylogenetics Sanvitalia Zinniinae Heliantheae Asteraceae biogeography |
391 | Target sequence capture in orchids: Developing a kit to sequence hundreds of single copy loci across all orchids Log in to add this item to your schedule | Phylogenomics | Eserman, Lauren; Thomas, Shawn; Coffey, Emily; Leebens-Mack, Jim. | phylogenomics target enrichment Next Generation Sequencing |
430 | The Evolutionary Relationships in Pertyeae (Asteraceae) inferred from Hyb-Seq Data Log in to add this item to your schedule | Phylogenomics | Gomez, Jorge; Siniscalchi, Carolina; Mandel, Jennifer. | Compositae systematics phylogenomics |
400 | The Plant and Fungal Trees of Life (PAFTOL) project: a case study from the carrot family (Apiaceae) Log in to add this item to your schedule | Phylogenomics | Clarkson, James; Maurin, Olivier; Brewer, Grace; Epitawalage, Niroshini; Zuntini, Alexandre; Kim, Jan; Bailey, Paul; Smith, James; Plunkett, Gregory; Downie, Stephen; Forest, Felix; Baker, William. | Tree of Life PAFTOL Angiosperms 353 Sequence Capture Apiaceae |
678 | The power of population sampling, splash-zone introns, and summary coalescent methods in targeted enrichment: untangling species relationships in Oenothera sect. Calylophus Log in to add this item to your schedule | Phylogenomics | Cooper, Benjamin; Moore, Michael; Wickett, Norman; Wagner, Warren; Johnson, Matthew; Overson, Rick; Skogen, Krissa. | target enrichment HybPiper multispecies coalescent Onagraceae Oenothera Calylophus Pollinator Shifts gypsum |
1005 | Towards a reclassification of Dioscoreales using organellar phylogenomics and morphology Log in to add this item to your schedule | Phylogenomics | Soto Gomez, Marybel; Lin, Qianshi; Lam, Vivienne; Merckx, Vincent; Rudall, Paula J; Graham, Sean. | Afrothismia APG update molecular and morphological data non-photosynthetic monocots plastid and mitochondrial phylogenomics |
569 | Using a phylogenomic approach to resolve the systematics and taxonomy of Tibouchina s.s. Log in to add this item to your schedule | Phylogenomics | Jantzen, Johanna; Oliveira, Ana Luiza Freitas; Soltis, Douglas; Soltis, Pamela. | phylogenomics target enrichment Melastomataceae Tibouchina Cerrado Campos rupestres |